J3_9Q6V_072

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

9Q6V|1|2a|U|1240, 9Q6V|1|2a|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6V_072 not in the Motif Atlas

Homologous match to J3_8B0X_013

Geometric discrepancy: 0.1446

The information below is about J3_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

9Q6V|1|2a|C|1237
9Q6V|1|2a|A|1238
9Q6V|1|2a|A|1239
9Q6V|1|2a|U|1240
9Q6V|1|2a|G|1241
*
9Q6V|1|2a|C|1296
9Q6V|1|2a|C|1297
9Q6V|1|2a|C|1298
9Q6V|1|2a|A|1299
9Q6V|1|2a|G|1300
9Q6V|1|2a|U|1301
9Q6V|1|2a|U|1302
9Q6V|1|2a|C|1303
*
9Q6V|1|2a|G|1334
9Q6V|1|2a|C|1335
9Q6V|1|2a|C|1336
9Q6V|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx