J3_9Q7Q_021

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

9Q7Q|1|5|U|4882, 9Q7Q|1|5|A|4938, 9Q7Q|1|5|C|4940, 9Q7Q|1|5|A|4943, 9Q7Q|1|5|C|4944, 9Q7Q|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q7Q|1|5|C|4749
9Q7Q|1|5|G|4750
9Q7Q|1|5|G|4751
9Q7Q|1|5|U|4752
9Q7Q|1|5|U|4753
9Q7Q|1|5|G|4754
*
9Q7Q|1|5|C|4879
9Q7Q|1|5|C|4880
9Q7Q|1|5|U|4881
9Q7Q|1|5|U|4882
9Q7Q|1|5|C|4883
*
9Q7Q|1|5|G|4936
9Q7Q|1|5|C|4937
9Q7Q|1|5|A|4938
9Q7Q|1|5|C|4939
9Q7Q|1|5|C|4940
9Q7Q|1|5|G|4941
9Q7Q|1|5|C|4942
9Q7Q|1|5|A|4943
9Q7Q|1|5|C|4944
9Q7Q|1|5|G|4945
9Q7Q|1|5|U|4946
9Q7Q|1|5|U|4947
9Q7Q|1|5|C|4948
9Q7Q|1|5|G|4949
9Q7Q|1|5|U|4950
9Q7Q|1|5|G|4951

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

Large ribosomal subunit protein eL14

Chain O

Large ribosomal subunit protein uL13

Chain f

eL33