J3_9Q7Q_034

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9Q7Q|1|K|G|1256, 9Q7Q|1|K|A|1258, 9Q7Q|1|K|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q7Q_034 not in the Motif Atlas

Homologous match to J3_9PN5_037

Geometric discrepancy: 0.1165

The information below is about J3_9PN5_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9Q7Q|1|K|C|1237
9Q7Q|1|K|U|1238
9Q7Q|1|K|U|1239
9Q7Q|1|K|A|1240
9Q7Q|1|K|A|1241
9Q7Q|1|K|U|1242
9Q7Q|1|K|U|1243
9Q7Q|1|K|U|1244
*
9Q7Q|1|K|G|1255
9Q7Q|1|K|G|1256
9Q7Q|1|K|G|1257
9Q7Q|1|K|A|1258
9Q7Q|1|K|A|1259
9Q7Q|1|K|A|1260
9Q7Q|1|K|C|1261
9Q7Q|1|K|C|1262
9Q7Q|1|K|U|1263
9Q7Q|1|K|C|1264
9Q7Q|1|K|A|1265
9Q7Q|1|K|C|1266
*
9Q7Q|1|K|G|1516
9Q7Q|1|K|G|1517
9Q7Q|1|K|C|1518
9Q7Q|1|K|U|1519
9Q7Q|1|K|G|1520

Current chains

Chain K

18S rRNA

Nearby chains

Chain 9

eS29

Chain GG

uS10

Chain II

uS13

Chain RF

Eukaryotic peptide chain release factor subunit 1

Chain WW

uS19