J3_9Q87_011

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9Q87|1|A|U|1212, 9Q87|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q87_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.104

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9Q87|1|A|C|990
9Q87|1|A|U|991
9Q87|1|A|U|992
9Q87|1|A|G|993
9Q87|1|A|A|994
9Q87|1|A|C|995
9Q87|1|A|A|996
9Q87|1|A|U|997
*
9Q87|1|A|A|1044
9Q87|1|A|C|1045
9Q87|1|A|A|1046
9Q87|1|A|G|1047
*
9Q87|1|A|C|1210
9Q87|1|A|U|1211
9Q87|1|A|U|1212
9Q87|1|A|A|1213
9Q87|1|A|C|1214
9Q87|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14