J3_9Q87_023

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9Q87|1|a|U|688, 9Q87|1|a|A|794, 9Q87|1|a|A|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q87_023 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0464

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9Q87|1|a|U|685
9Q87|1|a|G|686
9Q87|1|a|A|687
9Q87|1|a|U|688
9Q87|1|a|C|689
9Q87|1|a|U|690
9Q87|1|a|A|691
*
9Q87|1|a|U|775
9Q87|1|a|G|776
9Q87|1|a|G|777
*
9Q87|1|a|C|793
9Q87|1|a|A|794
9Q87|1|a|A|795
9Q87|1|a|A|796

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2