J3_9Q87_028

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q87_028 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0734

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9Q87|1|a|U|1346
9Q87|1|a|C|1347
9Q87|1|a|G|1348
9Q87|1|a|A|1349
9Q87|1|a|C|1350
9Q87|1|a|C|1351
*
9Q87|1|a|G|1384
9Q87|1|a|A|1385
9Q87|1|a|A|1386
9Q87|1|a|A|1387
*
9Q87|1|a|U|1404
9Q87|1|a|A|1405

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23