J3_9Q87_031
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9Q87|1|a|A|2392, 9Q87|1|a|U|2394, 9Q87|1|a|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q87_031 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0527
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9Q87|1|a|G|2286
9Q87|1|a|C|2287
9Q87|1|a|A|2288
*
9Q87|1|a|U|2388
9Q87|1|a|C|2389
9Q87|1|a|A|2390
9Q87|1|a|U|2391
9Q87|1|a|A|2392
9Q87|1|a|G|2393
9Q87|1|a|U|2394
9Q87|1|a|G|2395
9Q87|1|a|A|2396
9Q87|1|a|U|2397
9Q87|1|a|C|2398
9Q87|1|a|C|2399
*
9Q87|1|a|G|2425
9Q87|1|a|C|2426
9Q87|1|a|U|2427
9Q87|1|a|C|2428
9Q87|1|a|A|2429
9Q87|1|a|A|2430
9Q87|1|a|C|2431
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain 6
- A-site tRNA
- Chain k
- Large ribosomal subunit protein uL15
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: