J3_9Q87_033
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 9Q87|1|a|U|2338, 9Q87|1|a|A|2340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q87_033 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.1127
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9Q87|1|a|C|2299
9Q87|1|a|U|2300
9Q87|1|a|A|2301
9Q87|1|a|A|2302
9Q87|1|a|U|2303
*
9Q87|1|a|A|2321
9Q87|1|a|G|2322
9Q87|1|a|G|2323
9Q87|1|a|U|2324
9Q87|1|a|U|2325
9Q87|1|a|A|2326
9Q87|1|a|G|2327
*
9Q87|1|a|C|2336
9Q87|1|a|A|2337
9Q87|1|a|U|2338
9Q87|1|a|A|2339
9Q87|1|a|A|2340
9Q87|1|a|G|2341
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: