J3_9Q87_034
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9Q87|1|a|A|2522, 9Q87|1|a|U|2523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q87_034 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.0533
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Q87|1|a|C|2521
9Q87|1|a|A|2522
9Q87|1|a|U|2523
9Q87|1|a|C|2524
*
9Q87|1|a|G|2549
9Q87|1|a|U|2550
9Q87|1|a|A|2551
*
9Q87|1|a|U|2565
9Q87|1|a|U|2566
9Q87|1|a|U|2567
9Q87|1|a|A|2568
9Q87|1|a|A|2569
9Q87|1|a|A|2570
9Q87|1|a|G|2571
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: