J3_9QEH_008

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

9QEH|1|A|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEH_008 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1361

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9QEH|1|A|C|1335
9QEH|1|A|G|1336
9QEH|1|A|A|1337
9QEH|1|A|U|1338
9QEH|1|A|U|1339
9QEH|1|A|G|1340
*
9QEH|1|A|C|1669
9QEH|1|A|A|1670
9QEH|1|A|A|1671
*
9QEH|1|A|U|1683
9QEH|1|A|A|1684
9QEH|1|A|A|1685
9QEH|1|A|G|1686

Current chains

Chain A

23S rRNA

Nearby chains