J3_9QEH_013
3D structure
- PDB id
- 9QEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9QEH|1|A|A|2415, 9QEH|1|A|U|2417, 9QEH|1|A|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QEH_013 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1071
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9QEH|1|A|G|2309
9QEH|1|A|C|2310
9QEH|1|A|U|2311
*
9QEH|1|A|A|2411
9QEH|1|A|C|2412
9QEH|1|A|U|2413
9QEH|1|A|U|2414
9QEH|1|A|A|2415
9QEH|1|A|G|2416
9QEH|1|A|U|2417
9QEH|1|A|G|2418
9QEH|1|A|A|2419
9QEH|1|A|U|2420
9QEH|1|A|C|2421
9QEH|1|A|C|2422
*
9QEH|1|A|G|2448
9QEH|1|A|C|2449
9QEH|1|A|U|2450
9QEH|1|A|C|2451
9QEH|1|A|A|2452
9QEH|1|A|A|2453
9QEH|1|A|C|2454
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33A
- Chain 11
- E_site tRNA
- Chain 3
- Large ribosomal subunit protein bL35
- Chain J
- Large ribosomal subunit protein uL15
- Chain U
- Large ribosomal subunit protein bL27
Coloring options: