J3_9QLO_007

3D structure

PDB id

9QLO (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9QLO|1|L5|G|959, 9QLO|1|L5|C|962, 9QLO|1|L5|G|965, 9QLO|1|L5|C|967, 9QLO|1|L5|C|968, 9QLO|1|L5|C|969, 9QLO|1|L5|U|971, 9QLO|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QLO|1|L5|C|712
9QLO|1|L5|C|713
*
9QLO|1|L5|G|955
9QLO|1|L5|A|956
9QLO|1|L5|G|957
9QLO|1|L5|G|958
9QLO|1|L5|G|959
9QLO|1|L5|A|960
9QLO|1|L5|G|961
9QLO|1|L5|C|962
9QLO|1|L5|G|963
9QLO|1|L5|A|964
9QLO|1|L5|G|965
9QLO|1|L5|A|966
9QLO|1|L5|C|967
9QLO|1|L5|C|968
9QLO|1|L5|C|969
9QLO|1|L5|G|970
9QLO|1|L5|U|971
9QLO|1|L5|C|972
9QLO|1|L5|G|973
9QLO|1|L5|C|974
9QLO|1|L5|C|975
9QLO|1|L5|G|976
*
9QLO|1|L5|C|1278
9QLO|1|L5|A|1279
9QLO|1|L5|C|1280
9QLO|1|L5|G|1281
9QLO|1|L5|G|1282
9QLO|1|L5|G|1283
9QLO|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32