J3_9QLO_022

3D structure

PDB id

9QLO (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9QLO|1|L5|A|4464, 9QLO|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QLO_022 not in the Motif Atlas

Homologous match to J3_9H3G_024

Geometric discrepancy: 0.0655

The information below is about J3_9H3G_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.4

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

6

Unit IDs

9QLO|1|L5|U|4463
9QLO|1|L5|A|4464
9QLO|1|L5|U|4465
9QLO|1|L5|C|4466
*
9QLO|1|L5|G|4491
9QLO|1|L5|U|4492
9QLO|1|L5|U|4493
*
9QLO|1|L5|A|4507
9QLO|1|L5|C|4508
9QLO|1|L5|U|4509
9QLO|1|L5|A|4510
9QLO|1|L5|A|4511
9QLO|1|L5|U|4512
9QLO|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23