3D structure

PDB id
9QLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
NMT1-NAC bound human RNC with full length ARF1 - State 2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CCG*UUCCGG*CCAAAG
Length
15 nucleotides
Bulged bases
9QLP|1|S2|C|1138
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9QLP|1|S2|C|1094
9QLP|1|S2|C|1095
9QLP|1|S2|G|1096
*
9QLP|1|S2|U|1136
9QLP|1|S2|U|1137
9QLP|1|S2|C|1138
9QLP|1|S2|C|1139
9QLP|1|S2|G|1140
9QLP|1|S2|G|1141
*
9QLP|1|S2|C|1146
9QLP|1|S2|C|1147
9QLP|1|S2|A|1148
9QLP|1|S2|A|1149
9QLP|1|S2|A|1150
9QLP|1|S2|G|1151

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SA
40S ribosomal protein SA
Chain SC
40S ribosomal protein S2
Chain SV
40S ribosomal protein S21
Chain SW
40S ribosomal protein S15a
Chain Sa
40S ribosomal protein S26
Chain Sb
40S ribosomal protein S27

Coloring options:

Copyright 2026 BGSU RNA group. Page generated in 0.0956 s