J3_9QLQ_007

3D structure

PDB id

9QLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - alternative State

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9QLQ|1|L5|G|959, 9QLQ|1|L5|G|965, 9QLQ|1|L5|C|967, 9QLQ|1|L5|C|968, 9QLQ|1|L5|C|969, 9QLQ|1|L5|U|971, 9QLQ|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QLQ|1|L5|C|712
9QLQ|1|L5|C|713
*
9QLQ|1|L5|G|955
9QLQ|1|L5|A|956
9QLQ|1|L5|G|957
9QLQ|1|L5|G|958
9QLQ|1|L5|G|959
9QLQ|1|L5|A|960
9QLQ|1|L5|G|961
9QLQ|1|L5|C|962
9QLQ|1|L5|G|963
9QLQ|1|L5|A|964
9QLQ|1|L5|G|965
9QLQ|1|L5|A|966
9QLQ|1|L5|C|967
9QLQ|1|L5|C|968
9QLQ|1|L5|C|969
9QLQ|1|L5|G|970
9QLQ|1|L5|U|971
9QLQ|1|L5|C|972
9QLQ|1|L5|G|973
9QLQ|1|L5|C|974
9QLQ|1|L5|C|975
9QLQ|1|L5|G|976
*
9QLQ|1|L5|C|1278
9QLQ|1|L5|A|1279
9QLQ|1|L5|C|1280
9QLQ|1|L5|G|1281
9QLQ|1|L5|G|1282
9QLQ|1|L5|G|1283
9QLQ|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32