J3_9QOH_024

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUUG*CGUUC*GUUGACGCACGUUC

Length

23 nucleotides

Bulged bases

9QOH|1|A2|U|4527, 9QOH|1|A2|G|4584, 9QOH|1|A2|C|4586, 9QOH|1|A2|A|4589, 9QOH|1|A2|C|4590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QOH|1|A2|G|4403
9QOH|1|A2|U|4404
9QOH|1|A2|U|4405
9QOH|1|A2|G|4406
*
9QOH|1|A2|C|4524
9QOH|1|A2|G|4525
9QOH|1|A2|U|4526
9QOH|1|A2|U|4527
9QOH|1|A2|C|4528
*
9QOH|1|A2|G|4581
9QOH|1|A2|U|4582
9QOH|1|A2|U|4583
9QOH|1|A2|G|4584
9QOH|1|A2|A|4585
9QOH|1|A2|C|4586
9QOH|1|A2|G|4587
9QOH|1|A2|C|4588
9QOH|1|A2|A|4589
9QOH|1|A2|C|4590
9QOH|1|A2|G|4591
9QOH|1|A2|U|4592
9QOH|1|A2|U|4593
9QOH|1|A2|C|4594

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

Large ribosomal subunit protein eL14

Chain H2

Large ribosomal subunit protein eL6

Chain I2

Large ribosomal subunit protein uL13

Chain Z2

Large ribosomal subunit protein eL33