J3_9QQP_007

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGGAAGACCGUCGCCG*CACGGGG

Length

26 nucleotides

Bulged bases

9QQP|1|A2|A|857, 9QQP|1|A2|A|866, 9QQP|1|A2|C|868, 9QQP|1|A2|C|869, 9QQP|1|A2|U|871, 9QQP|1|A2|C|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|719
9QQP|1|A2|C|720
*
9QQP|1|A2|G|853
9QQP|1|A2|A|854
9QQP|1|A2|G|855
9QQP|1|A2|G|856
9QQP|1|A2|A|857
9QQP|1|A2|A|858
9QQP|1|A2|G|859
9QQP|1|A2|A|866
9QQP|1|A2|C|868
9QQP|1|A2|C|869
9QQP|1|A2|G|870
9QQP|1|A2|U|871
9QQP|1|A2|C|872
9QQP|1|A2|G|873
9QQP|1|A2|C|874
9QQP|1|A2|C|875
9QQP|1|A2|G|876
*
9QQP|1|A2|C|1092
9QQP|1|A2|A|1093
9QQP|1|A2|C|1094
9QQP|1|A2|G|1095
9QQP|1|A2|G|1096
9QQP|1|A2|G|1097
9QQP|1|A2|G|1098

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

Large ribosomal subunit protein uL4

Chain H2

Large ribosomal subunit protein eL6

Chain Y2

Large ribosomal subunit protein eL32