J3_9QQP_008

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGA(A2M)CUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9QQP|1|A2|A2M|1347, 9QQP|1|A2|G|1454, 9QQP|1|A2|A|1455

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|U|1344
9QQP|1|A2|G|1345
9QQP|1|A2|A|1346
9QQP|1|A2|A2M|1347
9QQP|1|A2|C|1348
9QQP|1|A2|U|1349
9QQP|1|A2|A|1350
*
9QQP|1|A2|U|1435
9QQP|1|A2|A|1436
9QQP|1|A2|G|1437
*
9QQP|1|A2|C|1453
9QQP|1|A2|G|1454
9QQP|1|A2|A|1455
9QQP|1|A2|A|1456

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain H1

Large ribosomal subunit protein eL15

Chain d2

Large ribosomal subunit protein eL37

Chain f2

Large ribosomal subunit protein eL39