J3_9QQP_010

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9QQP|1|A2|A|1607, 9QQP|1|A2|U|1636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|U|1528
9QQP|1|A2|U|1529
*
9QQP|1|A2|A|1604
9QQP|1|A2|G|1605
9QQP|1|A2|A|1606
9QQP|1|A2|A|1607
9QQP|1|A2|G|1608
*
9QQP|1|A2|C|1634
9QQP|1|A2|G|1635
9QQP|1|A2|U|1636
9QQP|1|A2|G|1637
9QQP|1|A2|G|1638
9QQP|1|A2|A|1639

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain N2

Large ribosomal subunit protein eL21

Chain V2

Large ribosomal subunit protein eL29