J3_9QQP_018

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|A|2353
9QQP|1|A2|G|2354
9QQP|1|A2|A|2355
9QQP|1|A2|A|2356
9QQP|1|A2|G|2357
*
9QQP|1|A2|C|2492
9QQP|1|A2|C|2493
*
9QQP|1|A2|G|2497
9QQP|1|A2|A|2498
9QQP|1|A2|A|2499
9QQP|1|A2|A|2500
9QQP|1|A2|A|2501
9QQP|1|A2|U|2502

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain a2

Large ribosomal subunit protein eL34

Chain j2

Large ribosomal subunit protein eL43