J3_9QQP_021

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9QQP|1|A2|C|3989, 9QQP|1|A2|U|4026

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|OMG|3880
9QQP|1|A2|U|3881
9QQP|1|A2|C|3882
*
9QQP|1|A2|G|3983
9QQP|1|A2|C|3984
9QQP|1|A2|C|3985
9QQP|1|A2|U|3986
9QQP|1|A2|C|3987
9QQP|1|A2|A|3988
9QQP|1|A2|C|3989
9QQP|1|A2|G|3990
9QQP|1|A2|A|3991
9QQP|1|A2|U|3992
9QQP|1|A2|C|3993
9QQP|1|A2|C|3994
*
9QQP|1|A2|OMG|4022
9QQP|1|A2|G|4023
9QQP|1|A2|U|4024
9QQP|1|A2|G|4025
9QQP|1|A2|U|4026
9QQP|1|A2|C|4027

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain K2

Large ribosomal subunit protein eL18

Chain N2

Large ribosomal subunit protein eL21

Chain U2

Large ribosomal subunit protein uL15

Chain i2

Large ribosomal subunit protein eL42

Chain n2

Transfer RNA; tRNA