J3_9QQP_022

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

9QQP|1|A2|A|3932, 9QQP|1|A2|A|3934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|3893
9QQP|1|A2|U|3894
9QQP|1|A2|C|3895
*
9QQP|1|A2|G|3919
9QQP|1|A2|A|3920
9QQP|1|A2|G|3921
*
9QQP|1|A2|C|3930
9QQP|1|A2|A|3931
9QQP|1|A2|A|3932
9QQP|1|A2|A|3933
9QQP|1|A2|A|3934
9QQP|1|A2|G|3935

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain E1

Large ribosomal subunit protein uL5

Chain G2

Large ribosomal subunit protein uL18

Chain N2

Large ribosomal subunit protein eL21

Chain i2

Large ribosomal subunit protein eL42