J3_9QQP_023

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9QQP|1|A2|A|4116, 9QQP|1|A2|U|4117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|U|4115
9QQP|1|A2|A|4116
9QQP|1|A2|U|4117
9QQP|1|A2|C|4118
*
9QQP|1|A2|G|4143
9QQP|1|A2|U|4144
9QQP|1|A2|U|4145
*
9QQP|1|A2|A|4159
9QQP|1|A2|C|4160
9QQP|1|A2|U|4161
9QQP|1|A2|A|4162
9QQP|1|A2|A|4163
9QQP|1|A2|U|4164
9QQP|1|A2|A|4165

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain I2

Large ribosomal subunit protein uL13

Chain P2

Large ribosomal subunit protein uL14