J3_9QQP_025

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9QQP|1|A2|U|4635, 9QQP|1|A2|C|4636, 9QQP|1|A2|A|4707

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|4616
9QQP|1|A2|A|4617
9QQP|1|A2|U|4618
*
9QQP|1|A2|G|4632
9QQP|1|A2|C|4633
9QQP|1|A2|U|4634
9QQP|1|A2|U|4635
9QQP|1|A2|C|4636
9QQP|1|A2|U|4637
*
9QQP|1|A2|A|4706
9QQP|1|A2|A|4707
9QQP|1|A2|G|4708
9QQP|1|A2|G|4709

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain J2

Large ribosomal subunit protein uL22

Chain X2

Large ribosomal subunit protein eL31