J3_9QQP_036
3D structure
- PDB id
- 9QQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse Ribosome rotated-2 PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9QQP|1|m2|G|1258, 9QQP|1|m2|A|1260, 9QQP|1|m2|A|1262
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QQP|1|m2|C|1239
9QQP|1|m2|U|1240
9QQP|1|m2|U|1241
9QQP|1|m2|A|1242
9QQP|1|m2|A|1243
9QQP|1|m2|U|1244
9QQP|1|m2|PSU|1245
9QQP|1|m2|U|1246
*
9QQP|1|m2|G|1257
9QQP|1|m2|G|1258
9QQP|1|m2|G|1259
9QQP|1|m2|A|1260
9QQP|1|m2|A|1261
9QQP|1|m2|A|1262
9QQP|1|m2|C|1263
9QQP|1|m2|C|1264
9QQP|1|m2|U|1265
9QQP|1|m2|C|1266
9QQP|1|m2|A|1267
9QQP|1|m2|C|1268
*
9QQP|1|m2|G|1518
9QQP|1|m2|G|1519
9QQP|1|m2|C|1520
9QQP|1|m2|U|1521
9QQP|1|m2|G|1522
Current chains
- Chain m2
- 18S ribosomal RNA
Nearby chains
- Chain A3
- Small ribosomal subunit protein uS13
- Chain Bv
- Transfer RNA; tRNA
- Chain C3
- Small ribosomal subunit protein uS10
- Chain H3
- Small ribosomal subunit protein uS14
- Chain x2
- Small ribosomal subunit protein uS19
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