J3_9QQP_039

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|m2|U|1352
9QQP|1|m2|G|1353
*
9QQP|1|m2|U|1362
9QQP|1|m2|G|1363
9QQP|1|m2|U|1364
9QQP|1|m2|C|1365
*
9QQP|1|m2|G|1377
9QQP|1|m2|A|1378
9QQP|1|m2|U|1379
9QQP|1|m2|A|1380
9QQP|1|m2|A|1381

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain J3

Small ribosomal subunit protein uS5

Chain o2

Small ribosomal subunit protein uS2

Chain z2

Small ribosomal subunit protein eS17