J3_9QQQ_002
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9QQQ|1|A|C|48, 9QQQ|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQQ_002 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1371
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9QQQ|1|A|G|46
9QQQ|1|A|C|47
9QQQ|1|A|C|48
9QQQ|1|A|U|49
9QQQ|1|A|A|50
9QQQ|1|A|A|51
9QQQ|1|A|C|52
*
9QQQ|1|A|G|359
9QQQ|1|A|G|360
9QQQ|1|A|G|361
9QQQ|1|A|G|362
9QQQ|1|A|A|363
9QQQ|1|A|A|364
9QQQ|1|A|U|365
9QQQ|1|A|A|366
9QQQ|1|A|U|367
*
9QQQ|1|A|A|393
9QQQ|1|A|G|394
9QQQ|1|A|C|395
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain P
- Small ribosomal subunit protein bS16
Coloring options: