J3_9QQQ_018
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9QQQ|1|a|A|504, 9QQQ|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQQ_018 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.1319
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9QQQ|1|a|G|30
9QQQ|1|a|C|31
*
9QQQ|1|a|G|474
9QQQ|1|a|C|475
9QQQ|1|a|G|476
9QQQ|1|a|A|477
9QQQ|1|a|A|478
9QQQ|1|a|A|479
9QQQ|1|a|A|480
9QQQ|1|a|G|481
9QQQ|1|a|A|482
9QQQ|1|a|A|483
9QQQ|1|a|C|484
*
9QQQ|1|a|G|496
9QQQ|1|a|A|497
9QQQ|1|a|G|498
9QQQ|1|a|U|499
9QQQ|1|a|G|500
9QQQ|1|a|A|501
9QQQ|1|a|A|502
9QQQ|1|a|A|503
9QQQ|1|a|A|504
9QQQ|1|a|A|505
9QQQ|1|a|G|506
9QQQ|1|a|A|507
9QQQ|1|a|A|508
9QQQ|1|a|C|509
9QQQ|1|a|C|510
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein uL22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: