J3_9QQQ_025

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|a|U|1344
9QQQ|1|a|C|1345
9QQQ|1|a|G|1346
9QQQ|1|a|A|1347
9QQQ|1|a|C|1348
9QQQ|1|a|C|1349
*
9QQQ|1|a|G|1382
9QQQ|1|a|A|1383
9QQQ|1|a|A|1384
9QQQ|1|a|A|1385
*
9QQQ|1|a|U|1402
9QQQ|1|a|A|1403

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23