J3_9QQQ_033

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9QQQ|1|a|U|2833, 9QQQ|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|a|G|2812
9QQQ|1|a|A|2813
9QQQ|1|a|A|2814
9QQQ|1|a|C|2815
*
9QQQ|1|a|G|2831
9QQQ|1|a|U|2832
9QQQ|1|a|U|2833
9QQQ|1|a|G|2834
9QQQ|1|a|A|2835
9QQQ|1|a|U|2836
*
9QQQ|1|a|A|2882
9QQQ|1|a|A|2883
9QQQ|1|a|U|2884
9QQQ|1|a|G|2885
9QQQ|1|a|A|2886
9QQQ|1|a|A|2887
9QQQ|1|a|C|2888

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32