J3_9QSJ_034

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9QSJ|1|a|U|2833, 9QSJ|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSJ|1|a|G|2812
9QSJ|1|a|A|2813
9QSJ|1|a|A|2814
9QSJ|1|a|C|2815
*
9QSJ|1|a|G|2831
9QSJ|1|a|U|2832
9QSJ|1|a|U|2833
9QSJ|1|a|G|2834
9QSJ|1|a|A|2835
9QSJ|1|a|U|2836
*
9QSJ|1|a|A|2882
9QSJ|1|a|A|2883
9QSJ|1|a|U|2884
9QSJ|1|a|G|2885
9QSJ|1|a|A|2886
9QSJ|1|a|A|2887
9QSJ|1|a|C|2888

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32