J3_9QWT_005

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

9QWT|1|A2|G|409, 9QWT|1|A2|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QWT|1|A2|U|380
9QWT|1|A2|U|381
9QWT|1|A2|G|382
9QWT|1|A2|A|383
9QWT|1|A2|A|384
9QWT|1|A2|A|385
9QWT|1|A2|A|386
9QWT|1|A2|G|387
9QWT|1|A2|A|388
9QWT|1|A2|A|389
9QWT|1|A2|C|390
*
9QWT|1|A2|G|401
9QWT|1|A2|A|402
9QWT|1|A2|G|403
9QWT|1|A2|U|404
9QWT|1|A2|U|405
9QWT|1|A2|C|406
9QWT|1|A2|A|407
9QWT|1|A2|A|408
9QWT|1|A2|G|409
9QWT|1|A2|A|410
9QWT|1|A2|G|411
9QWT|1|A2|G|412
9QWT|1|A2|G|413
9QWT|1|A2|C|414
9QWT|1|A2|G|415
*
9QWT|1|C2|C|19
9QWT|1|C2|A|20

Current chains

Chain A2

28S ribosomal RNA

Chain C2

5.8S ribosomal RNA

Nearby chains

Chain F2

Large ribosomal subunit protein uL4

Chain J2

Large ribosomal subunit protein uL22

Chain S2

Large ribosomal subunit protein uL24

Chain f2

Large ribosomal subunit protein eL39