J3_9QWT_007

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGAAGACCGUCGCCG*CACGGGG

Length

26 nucleotides

Bulged bases

9QWT|1|A2|A|857, 9QWT|1|A2|A|866, 9QWT|1|A2|C|868, 9QWT|1|A2|C|869, 9QWT|1|A2|U|871, 9QWT|1|A2|C|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QWT|1|A2|C|719
9QWT|1|A2|C|720
*
9QWT|1|A2|G|853
9QWT|1|A2|A|854
9QWT|1|A2|G|855
9QWT|1|A2|G|856
9QWT|1|A2|A|857
9QWT|1|A2|A|858
9QWT|1|A2|G|859
9QWT|1|A2|A|866
9QWT|1|A2|C|868
9QWT|1|A2|C|869
9QWT|1|A2|G|870
9QWT|1|A2|U|871
9QWT|1|A2|C|872
9QWT|1|A2|G|873
9QWT|1|A2|C|874
9QWT|1|A2|C|875
9QWT|1|A2|G|876
*
9QWT|1|A2|C|1092
9QWT|1|A2|A|1093
9QWT|1|A2|C|1094
9QWT|1|A2|G|1095
9QWT|1|A2|G|1096
9QWT|1|A2|G|1097
9QWT|1|A2|G|1098

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

Large ribosomal subunit protein uL4

Chain H2

Large ribosomal subunit protein eL6

Chain Y2

Large ribosomal subunit protein eL32