J3_9QWT_021

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9QWT|1|A2|C|3989, 9QWT|1|A2|U|4026

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QWT|1|A2|OMG|3880
9QWT|1|A2|U|3881
9QWT|1|A2|C|3882
*
9QWT|1|A2|G|3983
9QWT|1|A2|C|3984
9QWT|1|A2|C|3985
9QWT|1|A2|U|3986
9QWT|1|A2|C|3987
9QWT|1|A2|A|3988
9QWT|1|A2|C|3989
9QWT|1|A2|G|3990
9QWT|1|A2|A|3991
9QWT|1|A2|U|3992
9QWT|1|A2|C|3993
9QWT|1|A2|C|3994
*
9QWT|1|A2|OMG|4022
9QWT|1|A2|G|4023
9QWT|1|A2|U|4024
9QWT|1|A2|G|4025
9QWT|1|A2|U|4026
9QWT|1|A2|C|4027

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain K2

Large ribosomal subunit protein eL18

Chain N2

Large ribosomal subunit protein eL21

Chain U2

Large ribosomal subunit protein uL15

Chain i2

Large ribosomal subunit protein eL42

Chain n2

Transfer RNA; tRNA