J3_9QWT_024

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CGUUC*GUUGACGCACGUUC

Length

23 nucleotides

Bulged bases

9QWT|1|A2|U|4527, 9QWT|1|A2|G|4584, 9QWT|1|A2|C|4586, 9QWT|1|A2|A|4589, 9QWT|1|A2|C|4590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QWT|1|A2|G|4403
9QWT|1|A2|U|4404
9QWT|1|A2|U|4405
9QWT|1|A2|G|4406
*
9QWT|1|A2|C|4524
9QWT|1|A2|G|4525
9QWT|1|A2|U|4526
9QWT|1|A2|U|4527
9QWT|1|A2|C|4528
*
9QWT|1|A2|G|4581
9QWT|1|A2|U|4582
9QWT|1|A2|U|4583
9QWT|1|A2|G|4584
9QWT|1|A2|A|4585
9QWT|1|A2|C|4586
9QWT|1|A2|G|4587
9QWT|1|A2|C|4588
9QWT|1|A2|A|4589
9QWT|1|A2|C|4590
9QWT|1|A2|G|4591
9QWT|1|A2|U|4592
9QWT|1|A2|U|4593
9QWT|1|A2|C|4594

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

Large ribosomal subunit protein eL14

Chain H2

Large ribosomal subunit protein eL6

Chain I2

Large ribosomal subunit protein uL13

Chain Z2

Large ribosomal subunit protein eL33