J3_9R9P_003
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9R9P|1|C1|U|343, 9R9P|1|C1|A|351, 9R9P|1|C3|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9R9P|1|C1|C|340
9R9P|1|C1|G|341
9R9P|1|C1|A|342
9R9P|1|C1|U|343
9R9P|1|C1|A|344
9R9P|1|C1|G|345
9R9P|1|C1|C|346
9R9P|1|C1|G|347
9R9P|1|C1|A|348
9R9P|1|C1|A|349
9R9P|1|C1|C|350
9R9P|1|C1|A|351
9R9P|1|C1|A|352
9R9P|1|C1|G|353
9R9P|1|C1|U|354
9R9P|1|C1|A|355
9R9P|1|C1|C|356
*
9R9P|1|C1|G|363
9R9P|1|C1|G|364
9R9P|1|C1|A|365
9R9P|1|C1|A|366
9R9P|1|C1|A|367
9R9P|1|C1|G|368
*
9R9P|1|C3|C|21
9R9P|1|C3|U|22
9R9P|1|C3|U|23
9R9P|1|C3|G|24
Current chains
- Chain C1
- 25S ribosomal RNA
- Chain C3
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- Phosphoglycerate kinase
- Chain LC
- 60S ribosomal protein L4-A
- Chain LY
- 60S ribosomal protein L26-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
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