J3_9R9P_007

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9R9P|1|C1|A|817, 9R9P|1|C1|G|924, 9R9P|1|C1|A|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|U|814
9R9P|1|C1|G|815
9R9P|1|C1|A|816
9R9P|1|C1|A|817
9R9P|1|C1|C|818
9R9P|1|C1|U|819
9R9P|1|C1|A|820
*
9R9P|1|C1|U|905
9R9P|1|C1|A|906
9R9P|1|C1|G|907
*
9R9P|1|C1|C|923
9R9P|1|C1|G|924
9R9P|1|C1|A|925
9R9P|1|C1|A|926

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LN

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L37-A