J3_9R9P_018

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

9R9P|1|C1|C|2760, 9R9P|1|C1|C|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|G|2651
9R9P|1|C1|U|2652
9R9P|1|C1|C|2653
*
9R9P|1|C1|G|2754
9R9P|1|C1|C|2755
9R9P|1|C1|C|2756
9R9P|1|C1|U|2757
9R9P|1|C1|A|2758
9R9P|1|C1|U|2759
9R9P|1|C1|C|2760
9R9P|1|C1|G|2761
9R9P|1|C1|A|2762
9R9P|1|C1|U|2763
9R9P|1|C1|C|2764
9R9P|1|C1|C|2765
*
9R9P|1|C1|G|2793
9R9P|1|C1|G|2794
9R9P|1|C1|U|2795
9R9P|1|C1|G|2796
9R9P|1|C1|C|2797
9R9P|1|C1|C|2798

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18-A

Chain LT

60S ribosomal protein L21-A

Chain La

60S ribosomal protein L28

Chain Lo

60S ribosomal protein L42-A