J3_9R9P_021

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

9R9P|1|C1|A|3172, 9R9P|1|C1|G|3173, 9R9P|1|C1|A|3215, 9R9P|1|C1|G|3216, 9R9P|1|C1|A|3218, 9R9P|1|C1|G|3219, 9R9P|1|C1|A|3268, 9R9P|1|C1|U|3270, 9R9P|1|C1|C|3272, 9R9P|1|C1|U|3275, 9R9P|1|C1|G|3276, 9R9P|1|C1|U|3277, 9R9P|1|C1|C|3278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|U|3171
9R9P|1|C1|A|3172
9R9P|1|C1|G|3173
9R9P|1|C1|A|3174
9R9P|1|C1|U|3175
9R9P|1|C1|G|3176
*
9R9P|1|C1|C|3212
9R9P|1|C1|A|3213
9R9P|1|C1|U|3214
9R9P|1|C1|A|3215
9R9P|1|C1|G|3216
9R9P|1|C1|C|3217
9R9P|1|C1|A|3218
9R9P|1|C1|G|3219
9R9P|1|C1|G|3220
*
9R9P|1|C1|C|3265
9R9P|1|C1|G|3266
9R9P|1|C1|A|3267
9R9P|1|C1|A|3268
9R9P|1|C1|U|3269
9R9P|1|C1|U|3270
9R9P|1|C1|G|3271
9R9P|1|C1|C|3272
9R9P|1|C1|A|3273
9R9P|1|C1|A|3274
9R9P|1|C1|U|3275
9R9P|1|C1|G|3276
9R9P|1|C1|U|3277
9R9P|1|C1|C|3278
9R9P|1|C1|A|3279

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6-B

Chain LM

60S ribosomal protein L14-A

Chain LO

60S ribosomal protein L16-A

Chain LP

60S ribosomal protein L17-A

Chain Lf

60S ribosomal protein L33-A