J3_9RFW_002
3D structure
- PDB id
- 9RFW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9RFW|1|a|A|504, 9RFW|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RFW|1|a|G|30
9RFW|1|a|C|31
*
9RFW|1|a|G|474
9RFW|1|a|C|475
9RFW|1|a|G|476
9RFW|1|a|A|477
9RFW|1|a|A|478
9RFW|1|a|A|479
9RFW|1|a|A|480
9RFW|1|a|G|481
9RFW|1|a|A|482
9RFW|1|a|A|483
9RFW|1|a|C|484
*
9RFW|1|a|G|496
9RFW|1|a|A|497
9RFW|1|a|G|498
9RFW|1|a|U|499
9RFW|1|a|G|500
9RFW|1|a|A|501
9RFW|1|a|A|502
9RFW|1|a|A|503
9RFW|1|a|A|504
9RFW|1|a|A|505
9RFW|1|a|G|506
9RFW|1|a|A|507
9RFW|1|a|A|508
9RFW|1|a|C|509
9RFW|1|a|C|510
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein uL22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: