J3_9RFW_003
3D structure
- PDB id
- 9RFW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9RFW|1|a|U|34, 9RFW|1|a|U|448, 9RFW|1|a|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RFW|1|a|C|32
9RFW|1|a|C|33
9RFW|1|a|U|34
9RFW|1|a|G|35
*
9RFW|1|a|C|445
9RFW|1|a|G|446
9RFW|1|a|A|447
9RFW|1|a|U|448
9RFW|1|a|A|449
9RFW|1|a|G|450
9RFW|1|a|U|451
9RFW|1|a|G|452
9RFW|1|a|A|453
9RFW|1|a|A|454
9RFW|1|a|C|455
9RFW|1|a|C|456
9RFW|1|a|A|457
9RFW|1|a|G|458
9RFW|1|a|U|459
9RFW|1|a|A|460
9RFW|1|a|C|461
*
9RFW|1|a|G|468
9RFW|1|a|G|469
9RFW|1|a|A|470
9RFW|1|a|A|471
9RFW|1|a|A|472
9RFW|1|a|G|473
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain e
- Large ribosomal subunit protein uL4
- Chain p
- Large ribosomal subunit protein bL20
- Chain s
- Large ribosomal subunit protein uL23
Coloring options: