J3_9RFW_004

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

9RFW|1|a|U|72, 9RFW|1|a|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|A|56
9RFW|1|a|C|57
*
9RFW|1|a|G|70
9RFW|1|a|A|71
9RFW|1|a|U|72
9RFW|1|a|A|73
9RFW|1|a|A|74
9RFW|1|a|G|75
9RFW|1|a|C|76
*
9RFW|1|a|G|110
9RFW|1|a|A|111
9RFW|1|a|U|112
9RFW|1|a|U|113
9RFW|1|a|U|114

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23

Chain x

Large ribosomal subunit protein uL29