J3_9RFW_018

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9RFW|1|a|U|2833, 9RFW|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|G|2812
9RFW|1|a|A|2813
9RFW|1|a|A|2814
9RFW|1|a|C|2815
*
9RFW|1|a|G|2831
9RFW|1|a|U|2832
9RFW|1|a|U|2833
9RFW|1|a|G|2834
9RFW|1|a|A|2835
9RFW|1|a|U|2836
*
9RFW|1|a|A|2882
9RFW|1|a|A|2883
9RFW|1|a|U|2884
9RFW|1|a|G|2885
9RFW|1|a|A|2886
9RFW|1|a|A|2887
9RFW|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32