J3_9RJA_018
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9RJA|1|a|A|504, 9RJA|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RJA_018 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.1418
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.3
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9RJA|1|a|G|30
9RJA|1|a|C|31
*
9RJA|1|a|G|474
9RJA|1|a|C|475
9RJA|1|a|G|476
9RJA|1|a|A|477
9RJA|1|a|A|478
9RJA|1|a|A|479
9RJA|1|a|A|480
9RJA|1|a|G|481
9RJA|1|a|A|482
9RJA|1|a|A|483
9RJA|1|a|C|484
*
9RJA|1|a|G|496
9RJA|1|a|A|497
9RJA|1|a|G|498
9RJA|1|a|U|499
9RJA|1|a|G|500
9RJA|1|a|A|501
9RJA|1|a|A|502
9RJA|1|a|A|503
9RJA|1|a|A|504
9RJA|1|a|A|505
9RJA|1|a|G|506
9RJA|1|a|A|507
9RJA|1|a|A|508
9RJA|1|a|C|509
9RJA|1|a|C|510
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein uL22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: