J3_9RJA_034
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 9RJA|1|a|U|2833, 9RJA|1|a|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RJA|1|a|G|2812
9RJA|1|a|A|2813
9RJA|1|a|A|2814
9RJA|1|a|C|2815
*
9RJA|1|a|G|2831
9RJA|1|a|U|2832
9RJA|1|a|U|2833
9RJA|1|a|G|2834
9RJA|1|a|A|2835
9RJA|1|a|U|2836
*
9RJA|1|a|A|2882
9RJA|1|a|A|2883
9RJA|1|a|U|2884
9RJA|1|a|G|2885
9RJA|1|a|A|2886
9RJA|1|a|A|2887
9RJA|1|a|C|2888
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: