J3_9RPF_005

3D structure

PDB id

9RPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RPF_005 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.1569

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPF|1|A|A|1198
9RPF|1|A|G|1199
9RPF|1|A|G|1200
9RPF|1|A|A|1201
*
9RPF|1|A|U|1364
9RPF|1|A|A|1365
9RPF|1|A|C|1366
*
9RPF|1|A|G|1421
9RPF|1|A|G|1422
9RPF|1|A|A|1423
9RPF|1|A|U|1424

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain F

28S ribosomal protein S7, mitochondrial

Chain b

12S rRNA N4-methylcytidine (m4C) methyltransferase