J3_9RPV_020

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

9RPV|1|L5|G|4115, 9RPV|1|L5|C|4116, 9RPV|1|L5|U|4117, 9RPV|1|L5|U|4118, 9RPV|1|L5|C|4119, 9RPV|1|L5|U|4120, 9RPV|1|L5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|L5|G|4091
9RPV|1|L5|G|4092
9RPV|1|L5|G|4093
9RPV|1|L5|G|4094
9RPV|1|L5|G|4095
9RPV|1|L5|C|4096
9RPV|1|L5|G|4097
*
9RPV|1|L5|C|4112
9RPV|1|L5|U|4113
9RPV|1|L5|C|4114
9RPV|1|L5|G|4115
9RPV|1|L5|C|4116
9RPV|1|L5|U|4117
9RPV|1|L5|U|4118
9RPV|1|L5|C|4119
9RPV|1|L5|U|4120
9RPV|1|L5|G|4121
9RPV|1|L5|G|4122
9RPV|1|L5|C|4123
9RPV|1|L5|G|4124
9RPV|1|L5|C|4125
9RPV|1|L5|C|4126
9RPV|1|L5|A|4127
9RPV|1|L5|A|4128
9RPV|1|L5|G|4129
*
9RPV|1|L5|C|4155
9RPV|1|L5|G|4156
9RPV|1|L5|A|4157
9RPV|1|L5|C|4158

Current chains

Chain L5

28S rRNA of the collided 80S

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a

Chain SB

40S ribosomal protein S3a