J3_9RPV_021

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

9RPV|1|L5|C|4337, 9RPV|1|L5|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|L5|G|4228
9RPV|1|L5|U|4229
9RPV|1|L5|C|4230
*
9RPV|1|L5|G|4331
9RPV|1|L5|C|4332
9RPV|1|L5|C|4333
9RPV|1|L5|U|4334
9RPV|1|L5|C|4335
9RPV|1|L5|A|4336
9RPV|1|L5|C|4337
9RPV|1|L5|G|4338
9RPV|1|L5|A|4339
9RPV|1|L5|U|4340
9RPV|1|L5|C|4341
9RPV|1|L5|C|4342
*
9RPV|1|L5|G|4370
9RPV|1|L5|G|4371
9RPV|1|L5|U|4372
9RPV|1|L5|G|4373
9RPV|1|L5|U|4374
9RPV|1|L5|C|4375

Current chains

Chain L5

28S rRNA of the collided 80S

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a