J3_9RPV_031

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|U|380
9RPV|1|M5|U|381
9RPV|1|M5|G|382
9RPV|1|M5|A|383
9RPV|1|M5|A|384
9RPV|1|M5|A|385
9RPV|1|M5|A|386
9RPV|1|M5|G|387
*
9RPV|1|M5|C|414
9RPV|1|M5|G|415
*
9RPV|1|M8|C|19
9RPV|1|M8|A|20

Current chains

Chain M5

28S rRNA of the stalled 80S

Chain M8

5.8S rRNA of the stalled 80S

Nearby chains

Chain MC

60S ribosomal protein L4

Chain MY

60S ribosomal protein L26

Chain Ml

60S ribosomal protein L39