J3_9RPV_034

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9RPV|1|M5|G|959, 9RPV|1|M5|C|962, 9RPV|1|M5|G|965, 9RPV|1|M5|C|967, 9RPV|1|M5|C|968, 9RPV|1|M5|C|969, 9RPV|1|M5|U|971, 9RPV|1|M5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|712
9RPV|1|M5|C|713
*
9RPV|1|M5|G|955
9RPV|1|M5|A|956
9RPV|1|M5|G|957
9RPV|1|M5|G|958
9RPV|1|M5|G|959
9RPV|1|M5|A|960
9RPV|1|M5|G|961
9RPV|1|M5|C|962
9RPV|1|M5|G|963
9RPV|1|M5|A|964
9RPV|1|M5|G|965
9RPV|1|M5|A|966
9RPV|1|M5|C|967
9RPV|1|M5|C|968
9RPV|1|M5|C|969
9RPV|1|M5|G|970
9RPV|1|M5|U|971
9RPV|1|M5|C|972
9RPV|1|M5|G|973
9RPV|1|M5|C|974
9RPV|1|M5|C|975
9RPV|1|M5|G|976
*
9RPV|1|M5|C|1278
9RPV|1|M5|A|1279
9RPV|1|M5|C|1280
9RPV|1|M5|G|1281
9RPV|1|M5|G|1282
9RPV|1|M5|G|1283
9RPV|1|M5|G|1284

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MC

60S ribosomal protein L4

Chain ME

Large ribosomal subunit protein eL6

Chain MF

Large ribosomal subunit protein uL30

Chain Me

60S ribosomal protein L32